Ok so here is what happened. I created a replication group on my Microsoft Storage Server 2012 STD. I added a replication folder last night to test it and it worked fine. I decided that I didn't want to replicate that one folder so I removed it from the replicated folders tab and added a new replicated folder.
Now here is the issue. I cannot delete the replicated data in the original replicated folder. I cannot change the ownership of the files. When I run the takeown commands I get an access denied. I've tried logging in as local admin, domain admin, ..etc but nothing works. Outside of rebooting the server, does anyone have any suggestions?